PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01002g02011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 418aa    MW: 46082.7 Da    PI: 6.9093
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01002g02011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.13.7e-35361622126
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasece 74 
                               +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++            s        
  Niben101Scf01002g02011.1  36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptlgsvsvS-------- 112
                               79**************************************************************4444444333322........ PP

                       TCP  75 aesssssasnsssg....kaaksaakskksqksaasalnlak....esrakarararert 126
                                      as+ +++    ++++    ++++ ++++++ +l +     s+++a a  r++t
  Niben101Scf01002g02011.1 113 -------ASAANISnleqEKSQ---DENFTFHQENATTSLFDnaagPSNKRAMAALRNET 162
                               .......333333322211222...23333333332222222010133333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-3136216IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433896IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGDSQHQNHR TTSRLGLRST VGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK PAIDELAELP AWKPTLGSVS VSASAANISN  120
LEQEKSQDEN FTFHQENATT SLFDNAAGPS NKRAMAALRN ETNTSGSFLP PSLESDAIAD  180
TIKSFFPMGS STATNSSAMQ FQSFHQETNN MLSRTSSQNQ DLRLSLQFQD PILLHPQSQQ  240
AQHQHEHQTS NHREELQAQV GHFTPLGFDS SGCWSSMHQQ QQPVERVQRL ASWNDNRDTT  300
AQGGGYLFNS QPGQPPLLQQ LFCGQNQFYT QRGPLQSSNT PSVRAWIDPT SSAIAIASAD  360
QAVLPMYHHP STIPPGYGFA PEIGGFSGFR IPARIQGEEE EHDGISDKPS SASSDSRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795084.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016487618.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-102TCP4_ARATH; Transcription factor TCP4
TrEMBLM4PM760.0M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-92TCP family protein